PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ZF-HD
Protein Properties Length: 250aa    MW: 27108.3 Da    PI: 7.9214
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720860genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.12.1e-332078259
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                 ++v YkeClkNhAa+lGgha+DGCgEfmp+++++ +++++l+CaACgCHRnFHRr++++
    676720860 20 MGVCYKECLKNHAANLGGHALDGCGEFMPTPTATpTDPSSLRCAACGCHRNFHRRDPSD 78
                 5789*****************************99********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-192275IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-272275IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-302475IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.0492475IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-26142211IPR009057Homeodomain-like
SuperFamilySSF466897.45E-17143210IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-28152209IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDLSSKHKQT LTNSPVAGEM GVCYKECLKN HAANLGGHAL DGCGEFMPTP TATPTDPSSL  60
RCAACGCHRN FHRRDPSDHL GSFLPSHPTL SPSGTESPPS QSLHHVASPV PCSYYTSAPH  120
HVLLSLSSGF PGPSDQDPTA VRSENSSKGA MRKRTRTKFT PEQKVKMRAF AEKAGWRING  180
CDDMSVRDFC SEIGIERGVL KVWMHNNKYS HLNGKNREIV SMDHRLLCLN TQSCNNGGEE  240
GDNADGSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-211532101875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666218.11e-160PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-133ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A078GSU01e-160A0A078GSU0_BRANA; BnaC02g19350D protein
STRINGBra004399.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-122zinc finger homeodomain 1